Gene

si:ch211-202f3.3

ID

ZDB-GENE-080917-19

Name

si:ch211-202f3.3

Symbol

si:ch211-202f3.3 Nomenclature History

Previous Names

im:7154842 (1)

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to have calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to localize to cytoplasm. Is expressed in epidermis.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7154842 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:ch211-202f3.3 Human Ortholog

No data available

Associated With si:ch211-202f3.3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Active_site	IPR000169	Cysteine peptidase, cysteine active site
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR001300	Peptidase C2, calpain, catalytic domain
Domain	IPR002048	EF-hand domain
Domain	IPR022682	Peptidase C2, calpain, large subunit, domain III
Domain	IPR022683	Peptidase C2, calpain, domain III
Domain	IPR033883	Calpain subdomain III
Family	IPR022684	Peptidase C2, calpain family
Homologous_superfamily	IPR011992	EF-hand domain pair
Homologous_superfamily	IPR036213	Calpain large subunit, domain III superfamily
Homologous_superfamily	IPR038765	Papain-like cysteine peptidase superfamily

Domain Details Per Protein

Protein	Length	Calpain large subunit, domain III superfamily	Calpain subdomain III	Cysteine peptidase, cysteine active site	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair	Papain-like cysteine peptidase superfamily	Peptidase C2, calpain, catalytic domain	Peptidase C2, calpain, domain III	Peptidase C2, calpain family	Peptidase C2, calpain, large subunit, domain III
UniProtKB:A0A8M6Z1T3 InterPro	846

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:ch211-202f3.3-201 (1) Ensembl	Ensembl	2,344 nt	Select Tool
ncRNA	si:ch211-202f3.3-002 (1) Ensembl	Ensembl	863 nt	Select Tool
ncRNA	si:ch211-202f3.3-003 (1) Ensembl	Ensembl	830 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations