Gene

cadm1a

ID

ZDB-GENE-080505-2

Name

cell adhesion molecule 1a

Symbol

cadm1a Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Is expressed in immature eye; nervous system; and retina.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Pietri et al., 2008

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Charlton-Perkins et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cadm1a Human Ortholog

No data available

Associated With cadm1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003585	Neurexin/syndecan/glycophorin C
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013106	Immunoglobulin V-set domain
Domain	IPR013162	CD80-like, immunoglobulin C2-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	CD80-like, immunoglobulin C2-set	Immunoglobulin domain subtype	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2	Immunoglobulin V-set domain	Neurexin/syndecan/glycophorin C
UniProtKB:A0A8M3B4P4 InterPro	440
UniProtKB:A0A8M2B864 InterPro	407
UniProtKB:A0A8M1NF64 InterPro	446
UniProtKB:A0A8M9PIE5 InterPro	418
UniProtKB:A0A8M2B8F2 InterPro	435
UniProtKB:B0F6R0 InterPro	447

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cadm1a-201 (1) Ensembl	Ensembl	1,225 nt	Select Tool
mRNA	cadm1a-202 (1) Ensembl	Ensembl	1,233 nt	Select Tool ZFIN BLAST
mRNA	cadm1a-203 (1) Ensembl	Ensembl	1,309 nt	Select Tool
mRNA	cadm1a-204 (1) Ensembl	Ensembl	1,342 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations