Gene

fndc5b

ID
ZDB-GENE-060503-916
Name
fibronectin type III domain containing 5b
Symbol
fndc5b Nomenclature History
Previous Names
  • si:dkey-264p5.1
  • zgc:158684
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to enable hormone activity. Predicted to be located in extracellular region; peroxisomal membrane; and plasma membrane. Is expressed in heart and muscle. Orthologous to human FNDC5 (fibronectin type III domain containing 5).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Sundarrajan et al., 2017
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ihb253Allele with one deletionExon 2UnknownCRISPR
China Zebrafish Resource Center (CZRC) (order this)
ihb254Allele with one delinsExon 2UnknownCRISPR
China Zebrafish Resource Center (CZRC) (order this)
sa45676Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
y293EtTransgenic insertionUnknownUnknownDNA
Zebrafish International Resource Center (ZIRC) (order this)
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-fndc5b (2)
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Human Disease
Associated With fndc5b Human Ortholog
No data available
Associated With fndc5b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003961 Fibronectin type III
Domain IPR032073 Fibronectin type III domain-containing protein 5, C-terminal domain
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR036116 Fibronectin type III superfamily
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Domain Details Per Protein
Protein Length Fibronectin type III Fibronectin type III domain-containing protein 5, C-terminal domain Fibronectin type III superfamily Immunoglobulin-like fold
UniProtKB:A1L276
InterPro
UniProtKB:Q1L867
InterPro
207
UniProtKB:A0A8M2B6C8
InterPro
137
UniProtKB:B7ZVM3
InterPro
207
UniProtKB:A0A8M9PNB5
InterPro
173
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA fndc5b-201 (1)
Ensembl
Ensembl 884 nt
ZFIN BLAST
mRNA fndc5b-202 (1)
Ensembl
Ensembl 1,394 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-264P5ZFIN Curated Data
EncodescDNAMGC:158684ZFIN Curated Data
EncodescDNAMGC:198363ZFIN Curated Data
EncodescDNAMGC:198367ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001044337 (1)11241 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CR954168 (1)128597 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:B7ZVM3 (1)207 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanFNDC51
Amino acid sequence comparison (3)
MouseFndc54
Amino acid sequence comparison (3)
Citations
TSV
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Your Input Welcome
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