Gene
si:dkey-22o12.2
- ID
- ZDB-GENE-060503-443
- Name
- si:dkey-22o12.2
- Symbol
- si:dkey-22o12.2 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Description
- Involved in circadian behavior and nervous system development. Orthologous to human C3orf70 (chromosome 3 open reading frame 70).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Ashikawa et al., 2019
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR029670 | UPF0524 family |
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Domain Details Per Protein
| Protein | Length | UPF0524 family |
|---|---|---|
|
UniProtKB:Q1LY84
|
269 | |
|
UniProtKB:A0A8M9P8X2
|
204 | |
|
UniProtKB:A0A8M9Q9Q3
|
264 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:dkey-22o12.2-201
(1)
|
Ensembl | 4,764 nt |
1 - 1 of 1
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-22O12 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-24B15 | ZFIN Curated Data | |
| Has Artifact | EST | fc73f03 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001126467 (1) | 4764 nt | ||
| Genomic | GenBank:BX088533 (1) | 265699 nt | ||
| Polypeptide | UniProtKB:Q1LY84 (1) | 269 aa |
- Comparative Orthology
- Alliance
- Ashikawa, Y., Shiromizu, T., Miura, K., Adachi, Y., Matsui, T., Bessho, Y., Tanaka, T., Nishimura, Y. (2019) C3orf70 Is Involved in Neural and Neurobehavioral Development. Pharmaceuticals (Basel, Switzerland). 12(4):
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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