Gene

cpne4a

ID
ZDB-GENE-060503-427
Name
copine IVa
Symbol
cpne4a Nomenclature History
Previous Names
  • si:dkey-11p23.1
  • si:dkey-22o22.1
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in ventral habenular nucleus. Orthologous to human CPNE4 (copine 4).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Pandey et al., 2018
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With cpne4a Human Ortholog
No data available
Associated With cpne4a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000008 C2 domain
Domain IPR002035 von Willebrand factor, type A
Domain IPR010734 Copine, C-terminal
Domain IPR037768 Copine, C2B domain
Family IPR045052 Copine
1 - 5 of 7 Show all
Domain Details Per Protein
Protein Length C2 domain C2 domain superfamily Copine Copine, C2B domain Copine, C-terminal von Willebrand factor A-like domain superfamily von Willebrand factor, type A
UniProtKB:A0A0R4IS92
InterPro
553
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 16
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA cpne4a-201 (1)
Ensembl
Ensembl 2,580 nt
ZFIN BLAST
mRNA cpne4a-202 (1)
Ensembl
Ensembl 999 nt
ZFIN BLAST
mRNA cpne4a-203 (1)
Ensembl
Ensembl 1,623 nt
ZFIN BLAST
1 - 3 of 3
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-11P23ZFIN Curated Data
Contained inBACDKEY-22O22ZFIN Curated Data
Contained inBACDKEY-283F16ZFIN Curated Data
1 - 3 of 3
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_009292581 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:BX005012 (1)213678 nt
MegaBLAST
PolypeptideUniProtKB:A0A0R4IS92 (1)553 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanCPNE43
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseCpne49
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
1 - 1 of 1
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