Gene

vcam1a

ID
ZDB-GENE-060503-172
Name
vascular cell adhesion molecule 1a
Symbol
vcam1a Nomenclature History
Previous Names
  • si:dkey-60b12.4
Type
protein_coding_gene
Location
Chr: 2 Mapping Details/Browsers
Description
Acts upstream of or within lymphangiogenesis. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in gastrointestinal system disease. Orthologous to human VCAM1 (vascular cell adhesion molecule 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
Human Disease
Associated With vcam1a Human Ortholog
No data available
Associated With vcam1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003597 Immunoglobulin C1-set
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin domain subtype
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013768 Intercellular adhesion molecule, N-terminal
1 - 5 of 7 Show all
Domain Details Per Protein
Protein Length Immunoglobulin C1-set Immunoglobulin domain subtype Immunoglobulin-like domain Immunoglobulin-like domain superfamily Immunoglobulin-like fold Immunoglobulin subtype 2 Intercellular adhesion molecule, N-terminal
UniProtKB:F6NRL9
InterPro
440
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 2
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA vcam1a-201 (1)
Ensembl
Ensembl 1,703 nt
ZFIN BLAST
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-60B12ZFIN Curated Data
1 - 1 of 1
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_021466770 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:AL953893 (1)216749 nt
MegaBLAST
PolypeptideUniProtKB:F6NRL9 (1)440 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanVCAM11
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
1 - 2 of 2
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