Gene

samd11

ID

ZDB-GENE-060428-2

Name

sterile alpha motif domain containing 11

Symbol

samd11 Nomenclature History

Previous Names

samd11l (1)

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human SAMD11 (sterile alpha motif domain containing 11).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With samd11 Human Ortholog

No data available

Associated With samd11 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000770	SAND domain
Domain	IPR001660	Sterile alpha motif domain
Family	IPR050548	Polycomb group and chromatin remodeling factors
Homologous_superfamily	IPR010919	SAND-like domain superfamily
Homologous_superfamily	IPR013761	Sterile alpha motif/pointed domain superfamily

Domain Details Per Protein

Protein	Length	Polycomb group and chromatin remodeling factors	SAND domain	SAND-like domain superfamily	Sterile alpha motif domain	Sterile alpha motif/pointed domain superfamily
UniProtKB:A0A8M9PWY4 InterPro	600
UniProtKB:A0A8M9PWU9 InterPro	614
UniProtKB:A0A8M3AMZ4 InterPro	858
UniProtKB:A0A8M9PL54 InterPro	715
UniProtKB:A0A8M9Q7Z7 InterPro	584
UniProtKB:E7F6B2 InterPro	874

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	samd11-202 (1) Ensembl	Ensembl	1,054 nt	Select Tool ZFIN BLAST
mRNA	samd11-201 (1) Ensembl	Ensembl	848 nt	Select Tool ZFIN BLAST
mRNA	samd11-203 (1) Ensembl	Ensembl	4,308 nt	Select Tool ZFIN BLAST
mRNA	samd11-204 (1) Ensembl	Ensembl	2,130 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations