Gene
retsatl
- ID
- ZDB-GENE-051113-252
- Name
- retinol saturase (all-trans-retinol 13,14-reductase) like
- Symbol
- retsatl Nomenclature History
- Previous Names
-
- zRetSat B (1)
- wu:fi35b01
- zgc:123334
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Description
- Predicted to enable oxidoreductase activity. Is expressed in gut and ovary.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa10711 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa11225 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa21592 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa21593 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa21594 | Allele with one point mutation | Unknown | Splice Site | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | All-trans-retinol saturase | Amine oxidase | FAD/NAD(P)-binding domain superfamily |
|---|---|---|---|---|
|
UniProtKB:A0A8M1N8E2
|
604 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
retsatl-203
(1)
|
Ensembl | 2,081 nt | ||
| ncRNA |
retsatl-002
(1)
|
Ensembl | 1,429 nt | ||
| ncRNA |
retsatl-003
(1)
|
Ensembl | 770 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-229G14 | ZFIN Curated Data | |
| Contains | SNP | rs3728243 | ZFIN Curated Data | |
| Contains | SNP | rs3728244 | ZFIN Curated Data | |
| Contains | SNP | rs3728245 | ZFIN Curated Data | |
| Contains | SNP | rs3728246 | ZFIN Curated Data | |
| Encodes | EST | fi35b01 | ||
| Has Artifact | cDNA | MGC:123334 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001040004 (1) | 2059 nt | ||
| Genomic | GenBank:BX510317 (2) | 159458 nt | ||
| Polypeptide | UniProtKB:A0A8M1N8E2 (1) | 604 aa |
No data available
- Tzung, K.W., Goto, R., Saju, J.M., Sreenivasan, R., Saito, T., Arai, K., Yamaha, E., Hossain, M.S., Calvert, M.E., Orbán, L. (2015) Early Depletion of Primordial Germ Cells in Zebrafish Promotes Testis Formation. Stem Cell Reports. 4(1):61-73
- Heyn, P., Kircher, M., Dahl, A., Kelso, J., Tomancak, P., Kalinka, A.T., and Neugebauer, K.M. (2014) The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Reports. 6(2):285-292
- Sreenivasan, R., Cai, M., Bartfai, R., Wang, X., Christoffels, A., and Orban, L. (2008) Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. PLoS One. 3(3):e1791
- Moise, A.R., Isken, A., Dominguez, M., Lera, A.R., Lintig, J.V., and Palczewski, K. (2007) Specificity of Zebrafish Retinol Saturase: Formation of All-trans-13,14-dihydroretinol and All-trans-7,8- dihydroretinol. Biochemistry. 46(7):1811-1820
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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