Gene

npat

ID
ZDB-GENE-050506-54
Name
nuclear protein, ataxia-telangiectasia locus
Symbol
npat Nomenclature History
Previous Names
  • im:6901964
  • zmp:0000000655 (1)
Type
protein_coding_gene
Location
Chr: 15 Mapping Details/Browsers
Description
Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to be active in nucleus. Orthologous to human NPAT (nuclear protein, coactivator of histone transcription).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa10511Allele with one point mutationUnknownSplice SiteENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa16436Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa17688Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
uot2Allele with one deletionUnknownUnknownENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With npat Human Ortholog
No data available
Associated With npat Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR006594 LIS1 homology motif
Domain IPR031442 Protein NPAT, C-terminal domain
Family IPR052850 NPAT LisH domain-containing protein
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Domain Details Per Protein
Protein Length LIS1 homology motif NPAT LisH domain-containing protein Protein NPAT, C-terminal domain
UniProtKB:A0A0R4IH22
InterPro
1310
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 15
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA npat-201 (1)
Ensembl
Ensembl 4,347 nt
ZFIN BLAST
ncRNA npat-002 (1)
Ensembl
Ensembl 445 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-169I9
Contained inBACDKEY-54N8ZFIN Curated Data
EncodesESTIMAGE:6901964Thisse et al., 2004
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_685884 (1)4343 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CU856359216188 nt
MegaBLAST
PolypeptideUniProtKB:A0A0R4IH22 (1)1310 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Species Symbol Chromosome Accession # Evidence
HumanNPAT11
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
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