Gene
si:ch211-198n5.11
- ID
- ZDB-GENE-050411-52
- Name
- si:ch211-198n5.11
- Symbol
- si:ch211-198n5.11 Nomenclature History
- Previous Names
-
- im:7143041 (1)
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Description
- Predicted to enable ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Is expressed in myotome.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7143041 (7 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR011762 | Acetyl-coenzyme A carboxyltransferase, N-terminal |
| Domain | IPR011763 | Acetyl-coenzyme A carboxyltransferase, C-terminal |
| Domain | IPR034733 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta |
| Family | IPR045190 | Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like |
| Homologous_superfamily | IPR029045 | ClpP/crotonase-like domain superfamily |
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Domain Details Per Protein
| Protein | Length | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Acetyl-coenzyme A carboxyltransferase, C-terminal | Acetyl-coenzyme A carboxyltransferase, N-terminal | ClpP/crotonase-like domain superfamily | Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like |
|---|---|---|---|---|---|---|
|
UniProtKB:A9C3S0
|
603 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
si:ch211-198n5.11-203
(1)
|
Ensembl | 748 nt | ||
| mRNA |
si:ch211-198n5.11-201
(1)
|
Ensembl | 2,107 nt | ||
| ncRNA |
si:ch211-198n5.11-002
(1)
|
Ensembl | 1,269 nt | ||
| ncRNA |
si:ch211-198n5.11-004
(1)
|
Ensembl | 772 nt | ||
| ncRNA |
si:ch211-198n5.11-005
(1)
|
Ensembl | 440 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-198N5 | ZFIN Curated Data | |
| Encodes | EST | IMAGE:7143041 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001113652 (1) | 2107 nt | ||
| Genomic | GenBank:CR759968 (1) | 182233 nt | ||
| Polypeptide | UniProtKB:A9C3S0 (1) | 603 aa |
No data available
- Zhou, C., Li, M., Sun, Y., Sultan, Y., Li, X. (2024) Systematic Identification of Long Noncoding RNAs during Three Key Organogenesis Stages in Zebrafish. International Journal of Molecular Sciences. 25(6):
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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