Gene

rab3b

ID
ZDB-GENE-050208-660
Name
RAB3B, member RAS oncogene family
Symbol
rab3b Nomenclature History
Previous Names
  • si:dkey-171o17.3
Type
protein_coding_gene
Location
Chr: 22 Mapping Details/Browsers
Description
Predicted to enable GTPase activity and myosin V binding activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to human RAB3B (RAB3B, member RAS oncogene family).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Ebarasi et al., 2009
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-rab3bN/AEbarasi et al., 2009
1 - 1 of 1
Show
Human Disease
Associated With rab3b Human Ortholog
No data available
Associated With rab3b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR005225 Small GTP-binding domain
Family IPR001806 Small GTPase
Family IPR050305 Small GTPase superfamily, Rab
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
1 - 4 of 4
Domain Details Per Protein
Protein Length P-loop containing nucleoside triphosphate hydrolase Small GTPase Small GTPase superfamily, Rab Small GTP-binding domain
UniProtKB:Q1L986
InterPro
217
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 22
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rab3b-201 (1)
Ensembl
Ensembl 822 nt
ZFIN BLAST
mRNA rab3b-202 (1)
Ensembl
Ensembl 5,067 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-171O17ZFIN Curated Data
1 - 1 of 1
Show
Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_680562 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:CR381682 (1)106921 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:Q1L986 (1)217 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRAB3B1
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseRab3b4
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
1 - 3 of 3
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.