Gene

rbbp5

ID

ZDB-GENE-040426-886

Name

retinoblastoma binding protein 5

Symbol

rbbp5 Nomenclature History

Previous Names

zgc:56078
zgc:85864

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to localize to Set1C/COMPASS complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:85864 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbbp5 Human Ortholog

No data available

Associated With rbbp5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR037850	Retinoblastoma-binding protein 5/Swd1
Homologous_superfamily	IPR015943	WD40/YVTN repeat-like-containing domain superfamily
Repeat	IPR001680	WD40 repeat

Domain Details Per Protein

Protein	Length	Retinoblastoma-binding protein 5/Swd1	WD40 repeat	WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:A0A8M2BFL1 InterPro	535
UniProtKB:Q7ZUU9 InterPro	512

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rbbp5-201 (1) Ensembl	Ensembl		1,999 nt	Select Tool ZFIN BLAST
mRNA	rbbp5-202 (1) Ensembl	Ensembl		832 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations