Gene

uso1

ID

ZDB-GENE-040426-688

Name

USO1 vesicle transport factor

Symbol

uso1 Nomenclature History

Previous Names

vdp (1)
zgc:55298 (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to be involved in several processes, including Golgi vesicle transport; intracellular protein transport; and transcytosis. Predicted to localize to ER to Golgi transport vesicle membrane; Golgi stack; and endoplasmic reticulum. Is expressed in notochord. Orthologous to human USO1 (USO1 vesicle transport factor).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55298 (5 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With uso1 Human Ortholog

No data available

Associated With uso1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR006953	Vesicle tethering protein Uso1/P115-like, head domain
Domain	IPR006955	Uso1/p115-like vesicle tethering protein, C-terminal
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo
Repeat	IPR041209	Vesicle tethering protein p115, armadillo tether-repeat

Domain Details Per Protein

Protein	Length	Armadillo	Armadillo-like helical	Armadillo-type fold	Uso1/p115-like vesicle tethering protein, C-terminal	Vesicle tethering protein p115, armadillo tether-repeat	Vesicle tethering protein Uso1/P115-like, head domain
UniProtKB:E7F2J5 InterPro	952
UniProtKB:A0A2R8QLN9 InterPro	949
UniProtKB:A0A8M3APK5 InterPro	945
UniProtKB:Q7ZW40 InterPro	956

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	uso1-201 (1) Ensembl	Ensembl	4,910 nt	Select Tool ZFIN BLAST
mRNA	uso1-202 (1) Ensembl	Ensembl	3,911 nt	Select Tool
mRNA	uso1-203 (1) Ensembl	Ensembl	808 nt	Select Tool
mRNA	uso1-205 (1) Ensembl	Ensembl	1,242 nt	Select Tool
mRNA	uso1-208 (1) Ensembl	Ensembl	4,901 nt	Select Tool ZFIN BLAST
ncRNA	uso1-002 (1) Ensembl	Ensembl	576 nt	Select Tool
ncRNA	uso1-004 (1) Ensembl	Ensembl	538 nt	Select Tool
ncRNA	uso1-006 (1) Ensembl	Ensembl	349 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations