Gene

sf3b3

ID
ZDB-GENE-040426-2901
Name
splicing factor 3b, subunit 3
Symbol
sf3b3 Nomenclature History
Previous Names
  • ik:tdsubc_2b2
  • wu:fb81f05
  • xx:tdsubc_2b2
  • zgc:55440 (1)
Type
protein_coding_gene
Location
Chr: 18 Mapping Details/Browsers
Description
Predicted to have nucleic acid binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to U2-type precatalytic spliceosome. Orthologous to human SF3B3 (splicing factor 3b subunit 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sf3b3 Human Ortholog
No data available
Associated With sf3b3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
Domain IPR018846 Cleavage/polyadenylation specificity factor, A subunit, N-terminal
Family IPR050358 RSE1/DDB1/CFT1/CPSF1
Homologous_superfamily IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Homologous_superfamily IPR036322 WD40-repeat-containing domain superfamily
Domain Details Per Protein
Protein Length Cleavage/polyadenylation specificity factor, A subunit, C-terminal Cleavage/polyadenylation specificity factor, A subunit, N-terminal RSE1/DDB1/CFT1/CPSF1 WD40-repeat-containing domain superfamily WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:Q1LVE8 1217
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sf3b3-201 (1) Ensembl 4,437 nt
mRNA sf3b3-203 (1) Ensembl 8,009 nt
ncRNA ottdart00000053080 (1) Ensembl 839 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations