Gene

tcea3

ID

ZDB-GENE-040426-1860

Name

transcription elongation factor A (SII), 3

Symbol

tcea3 Nomenclature History

Previous Names

zgc:77732 (1)

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have translation elongation factor activity and zinc ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to localize to nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:77732 (9 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tcea3 Human Ortholog

No data available

Associated With tcea3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001222	Zinc finger, TFIIS-type
Domain	IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Domain	IPR003618	Transcription elongation factor S-II, central domain
Domain	IPR017923	Transcription factor IIS, N-terminal
Family	IPR006289	Transcription elongation factor, TFIIS
Family	IPR035100	Transcription elongation factor, IIS-type
Homologous_superfamily	IPR035441	TFIIS/LEDGF domain superfamily
Homologous_superfamily	IPR036575	Transcription elongation factor S-II, central domain superfamily

Domain Details Per Protein

Protein	Length	TFIIS/LEDGF domain superfamily	Transcription elongation factor, IIS-type	Transcription elongation factor S-II, central domain	Transcription elongation factor S-II, central domain superfamily	Transcription elongation factor, TFIIS	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Transcription factor IIS, N-terminal	Zinc finger, TFIIS-type
UniProtKB:A0A8M9NZ77 InterPro	745
UniProtKB:A0A8M3B1T7 InterPro	684
UniProtKB:A0A8M3AQQ8 InterPro	696
UniProtKB:A0A8M9PMD2 InterPro	686
UniProtKB:A0A8M9PD11 InterPro	765
UniProtKB:Q6P0U5 InterPro	409
UniProtKB:A0A8M2B4P3 InterPro	783
UniProtKB:A0A8M3AJ93 InterPro	524
UniProtKB:A0A8M6Z1R7 InterPro	765
UniProtKB:A0A8M3AQR4 InterPro	455
UniProtKB:A0A8M9PMC8 InterPro	747
UniProtKB:A0A8M6YSP1 InterPro	763
UniProtKB:A0A8M9P7V0 InterPro	745
UniProtKB:A0A8M3AI98 InterPro	399
UniProtKB:A0A8M9NZ73 InterPro	765
UniProtKB:A0A8M9PJD8 InterPro	747
UniProtKB:A0A8M9PD15 InterPro	709
UniProtKB:A0A8M3AJ90 InterPro	727
UniProtKB:A0A8M3ATK5 InterPro	709
UniProtKB:A0A8M3AI93 InterPro	691
UniProtKB:A0A8M3B1U0 InterPro	381
UniProtKB:A0A8M3ATL0 InterPro	496

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tcea3-201 (1) Ensembl	Ensembl	1,842 nt	Select Tool
mRNA	tcea3-202 (1) Ensembl	Ensembl	1,055 nt	Select Tool
mRNA	tcea3-203 (1) Ensembl	Ensembl	697 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations