Gene

surf6

ID

ZDB-GENE-040426-1333

Name

surfeit 6

Symbol

surf6 Nomenclature History

Previous Names

surf6l (1)
zgc:64008

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have DNA binding activity and RNA binding activity. Involved in heart development. Predicted to localize to nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; retina; and segmental plate. Orthologous to human SURF6 (surfeit 6).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:64008 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 3 figures from 3 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With surf6 Human Ortholog

No data available

Associated With surf6 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR029190	Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain
Family	IPR007019	Surfeit locus 6

Domain Details Per Protein

Protein	Length	Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain	Surfeit locus 6
UniProtKB:Q7T3A6 InterPro	362
UniProtKB:Q6DRK9 InterPro	362

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	surf6-201 (1) Ensembl	Ensembl		1,378 nt	Select Tool ZFIN BLAST
mRNA	surf6-202 (1) Ensembl	Ensembl		1,500 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations