Gene
ddx39b
- ID
- ZDB-GENE-040426-1259
- Name
- DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
- Symbol
- ddx39b Nomenclature History
- Previous Names
-
- bat1
- zgc:63773 (1)
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to transcription export complex. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:63773 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001650 | Helicase, C-terminal domain-like |
| Domain | IPR011545 | DEAD/DEAH box helicase domain |
| Domain | IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Domain | IPR014014 | RNA helicase, DEAD-box type, Q motif |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Domain Details Per Protein
| Protein | Length | DEAD/DEAH box helicase domain | Helicase, C-terminal domain-like | Helicase superfamily 1/2, ATP-binding domain | P-loop containing nucleoside triphosphate hydrolase | RNA helicase, DEAD-box type, Q motif |
|---|---|---|---|---|---|---|
|
UniProtKB:Q7SXU7
|
435 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ddx39b-201
(1)
|
Ensembl | 1,928 nt | ||
| mRNA |
ddx39b-203
(1)
|
Ensembl | 2,708 nt | ||
| ncRNA |
ddx39b-002
(1)
|
Ensembl | 413 nt |
Interactions and Pathways
No data available
Plasmids
No data available