Gene

bmal1b

ID

ZDB-GENE-030408-1

Name

basic helix-loop-helix ARNT like 1b

Symbol

bmal1b Nomenclature History

Previous Names

bmal1b
zfBMAL3 (1)
arntl1b (1)

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Exhibits chromatin binding activity. Contributes to DNA binding activity. Involved in photoperiodism and positive regulation of gene expression. Localizes to chromatin and transcription factor complex. Is expressed in brain; heart; liver; muscle; and retina. Orthologous to human ARNTL (aryl hydrocarbon receptor nuclear translocator like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

11 figures from 8 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With bmal1b Human Ortholog

No data available

Associated With bmal1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000014	PAS domain
Domain	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Domain	IPR013767	PAS fold
Family	IPR001067	Nuclear translocator
Family	IPR050933	Circadian Clock Transcription Factors
Homologous_superfamily	IPR035965	PAS domain superfamily
Homologous_superfamily	IPR036638	Helix-loop-helix DNA-binding domain superfamily
Repeat	IPR001610	PAC motif

Domain Details Per Protein

Protein	Length	Circadian Clock Transcription Factors	Helix-loop-helix DNA-binding domain superfamily	Myc-type, basic helix-loop-helix (bHLH) domain	Nuclear translocator	PAC motif	PAS domain	PAS domain superfamily	PAS fold
UniProtKB:A0A8M9PNL9 InterPro	671
UniProtKB:A0A8M3BBD8 InterPro	653
UniProtKB:Q8JIG1 InterPro	622
UniProtKB:A0A8M2BE61 InterPro	676

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	arntl1b-201 (1) Ensembl	Ensembl	2,400 nt	Select Tool ZFIN BLAST
mRNA	arntl1b-203 (1) Ensembl	Ensembl	1,869 nt	Select Tool ZFIN BLAST
ncRNA	arntl1b-003 (1) Ensembl	Ensembl	1,210 nt	Select Tool ZFIN BLAST
ncRNA	arntl1b-004 (1) Ensembl	Ensembl	815 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations