Gene

sdk2b

ID

ZDB-GENE-030131-8203

Name

sidekick cell adhesion molecule 2b

Symbol

sdk2b Nomenclature History

Previous Names

fj59h01
si:ch211-160a3.1
wu:fj59h01 (1)

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to localize to synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Galicia et al., 2018

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sdk2b Human Ortholog

No data available

Associated With sdk2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin domain subtype	Immunoglobulin I-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2
UniProtKB:A0A8M3BEB8 InterPro	2256
UniProtKB:A0A8M3AYL4 InterPro	2240
UniProtKB:A0A8M3B4U7 InterPro	2221
UniProtKB:A0A8M3B7N2 InterPro	2237
UniProtKB:A0A8M3AYN6 InterPro	1254
UniProtKB:A0A8M9QJA7 InterPro	2254

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sdk2b-201 (1) Ensembl	Ensembl		6,432 nt	Select Tool ZFIN BLAST
mRNA	sdk2b-202 (1) Ensembl	Ensembl		6,798 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations