Gene

phgdh

ID
ZDB-GENE-030131-647
Name
phosphoglycerate dehydrogenase
Symbol
phgdh Nomenclature History
Previous Names
  • fb38f06
  • wu:fb38f06
  • zgc:65956 (1)
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Predicted to have phosphoglycerate dehydrogenase activity. Predicted to be involved in cellular amino acid metabolic process. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 1; PHGDH deficiency; and amino acid metabolic disorder. Orthologous to human PHGDH (phosphoglycerate dehydrogenase).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With phgdh Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Neu-Laxova syndrome 1 Alliance Neu-Laxova syndrome 1 256520
PHGDH deficiency Alliance Phosphoglycerate dehydrogenase deficiency 601815
Associated With phgdh Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1
Domain IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Domain IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Domain IPR045626 D-3-phosphoglycerate dehydrogenase, ASB domain
Family IPR006236 D-3-phosphoglycerate dehydrogenase
Homologous_superfamily IPR029009 Allosteric substrate binding domain superfamily
Homologous_superfamily IPR036291 NAD(P)-binding domain superfamily
Domain Details Per Protein
Protein Length Allosteric substrate binding domain superfamily D-3-phosphoglycerate dehydrogenase D-3-phosphoglycerate dehydrogenase, ASB domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NAD(P)-binding domain superfamily
UniProtKB:F1QEY8 528
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA phgdh-201 (1) Ensembl 2,374 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations