Gene

rbm25b

ID

ZDB-GENE-030131-5547

Name

RNA binding motif protein 25b

Symbol

rbm25b Nomenclature History

Previous Names

rbm25
fi03e10
si:ch211-105d18.5
wu:fi03e10
zgc:56208 (1)

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Orthologous to human RBM25 (RNA binding motif protein 25).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:56208 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm25b Human Ortholog

No data available

Associated With rbm25b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR002483	PWI domain
Domain	IPR034268	RBM25, RNA recognition motif
Family	IPR052768	Pre-mRNA_splicing_regulatory_protein
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036483	PWI domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	Pre-mRNA_splicing_regulatory_protein	PWI domain	PWI domain superfamily	RBM25, RNA recognition motif	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:Q7ZV58 InterPro	731
UniProtKB:A8DZA0 InterPro	830

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rbm25b-203 (1) Ensembl	Ensembl	613 nt	Select Tool ZFIN BLAST
mRNA	rbm25b-201 (1) Ensembl	Ensembl	3,094 nt	Select Tool ZFIN BLAST
mRNA	rbm25b-202 (1) Ensembl	Ensembl	2,376 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations