Gene

khdc4

ID

ZDB-GENE-030131-405

Name

KH domain containing 4, pre-mRNA splicing factor

Symbol

khdc4 Nomenclature History

Previous Names

kiaa0907
si:zfos-1192g2.2
wu:fb26g02

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to enable RNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human KHDC4 (KH domain containing 4, pre-mRNA splicing factor).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55537 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With khdc4 Human Ortholog

No data available

Associated With khdc4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR047889	KHDC4, second type I KH domain
Domain	IPR047890	KHDC4, first type I KH domain
Family	IPR031121	KH domain containing protein RIK/BLOM7
Homologous_superfamily	IPR036612	K Homology domain, type 1 superfamily

Domain Details Per Protein

Protein	Length	KHDC4, first type I KH domain	KHDC4, second type I KH domain	KH domain containing protein RIK/BLOM7	K Homology domain, type 1 superfamily
UniProtKB:F1QQM1 InterPro	570
UniProtKB:A0A8M3AR35 InterPro	570
UniProtKB:A0A8M2BH01 InterPro	571
UniProtKB:A0A8M3ATY7 InterPro	571
UniProtKB:A0A8M3AJJ6 InterPro	572
UniProtKB:Q6NZ18 InterPro	570
UniProtKB:A0A8M9P7R6 InterPro	501
UniProtKB:A0A8M3B243 InterPro	450

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	khdc4-201 (1) Ensembl	Ensembl	2,044 nt	Select Tool ZFIN BLAST
mRNA	khdc4-204 (1) Ensembl	Ensembl	2,040 nt	Select Tool ZFIN BLAST
ncRNA	kiaa0907-002 (1) Ensembl	Ensembl	722 nt	Select Tool ZFIN BLAST
ncRNA	kiaa0907-003 (1) Ensembl	Ensembl	861 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations