Gene
pabpc1a
- ID
- ZDB-GENE-030131-3238
- Name
- poly(A) binding protein, cytoplasmic 1a
- Symbol
- pabpc1a Nomenclature History
- Previous Names
-
- pabpc1
- wu:fb16a02
- wu:fc31e01
- wu:fi19b08
- wu:fj12d09
- wu:fj61f06
- zgc:109879
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to have mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Involved in heart development. Predicted to localize to several cellular components, including cytoplasmic stress granule; cytosol; and ribonucleoprotein complex. Is expressed in several structures, including central nervous system; digestive system; eye; pectoral fin bud; and ventral mesenchyme. Orthologous to several human genes including PABPC1 (poly(A) binding protein cytoplasmic 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7151399 (1 image)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein |
| Domain | IPR003954 | RNA recognition motif domain, eukaryote |
| Domain | IPR034364 | PABP, RNA recognition motif 1 |
| Domain | IPR045305 | PABP, RNA recognition motif 2 |
| Family | IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036053 | PABC (PABP) domain |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | PABC (PABP) domain | PABP, RNA recognition motif 1 | PABP, RNA recognition motif 2 | Polyadenylate binding protein, human types 1, 2, 3, 4 | Polyadenylate-binding protein/Hyperplastic disc protein | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryote |
|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:F1QB54
|
634 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pabpc1a-201
(1)
|
Ensembl | 2,554 nt | ||
| mRNA |
pabpc1a-202
(1)
|
Ensembl | 2,033 nt | ||
| ncRNA |
pabpc1a-003
(1)
|
Ensembl | 539 nt | ||
| ncRNA |
pabpc1a-004
(1)
|
Ensembl | 660 nt | ||
| ncRNA |
pabpc1a-005
(1)
|
Ensembl | 330 nt | ||
| ncRNA |
pabpc1a-006
(1)
|
Ensembl | 747 nt |
Interactions and Pathways
No data available
Plasmids
No data available