Gene

si:ch211-154o6.3

ID

ZDB-GENE-030131-1030

Name

si:ch211-154o6.3

Symbol

si:ch211-154o6.3 Nomenclature History

Previous Names

fb57e01
si:ch1073-327m5.1
wu:fb57e01

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have histone binding activity. Predicted to be involved in histone H3-K4 methylation. Predicted to localize to Set1C/COMPASS complex.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:ch211-154o6.3 Human Ortholog

No data available

Associated With si:ch211-154o6.3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR039241	Ribosomal RNA-processing protein Rrp9-like
Homologous_superfamily	IPR015943	WD40/YVTN repeat-like-containing domain superfamily
Homologous_superfamily	IPR036322	WD40-repeat-containing domain superfamily
Repeat	IPR001680	WD40 repeat
Repeat	IPR020472	G-protein beta WD-40 repeat

Domain Details Per Protein

Protein	Length	G-protein beta WD-40 repeat	Ribosomal RNA-processing protein Rrp9-like	WD40 repeat	WD40-repeat-containing domain superfamily	WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:A0A8M9PD56 InterPro	412
UniProtKB:Q1LXQ1 InterPro	521

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:ch211-154o6.3-203 (1) Ensembl	Ensembl	1,196 nt	Select Tool
mRNA	si:ch211-154o6.3-206 (1) Ensembl	Ensembl	736 nt	Select Tool
mRNA	si:ch211-154o6.3-207 (1) Ensembl	Ensembl	5,910 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000061946 (1) Ensembl	Ensembl	856 nt	Select Tool
ncRNA	ottdart00000061947 (1) Ensembl	Ensembl	702 nt	Select Tool
ncRNA	ottdart00000061948 (1) Ensembl	Ensembl	693 nt	Select Tool
ncRNA	ottdart00000061949 (1) Ensembl	Ensembl	617 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations