Gene

rps27a

ID

ZDB-GENE-030131-10018

Name

ribosomal protein S27a

Symbol

rps27a Nomenclature History

Previous Names

hm:zeh0386
ik:tdsubc_1f2
tdsubc_1f2
xx:tdsubc_1f2
zgc:66168

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to localize to cytosolic small ribosomal subunit and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:66168 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rps27a Human Ortholog

No data available

Associated With rps27a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019954	Ubiquitin conserved site
Domain	IPR000626	Ubiquitin-like domain
Domain	IPR002906	Small ribosomal subunit protein eS31
Domain	IPR019956	Ubiquitin domain
Family	IPR050158	Ubiquitin and ubiquitin-like
Homologous_superfamily	IPR011332	Zinc-binding ribosomal protein
Homologous_superfamily	IPR029071	Ubiquitin-like domain superfamily
Homologous_superfamily	IPR038582	Small ribosomal subunit protein eS31 eukaryotic-type superfamily

Domain Details Per Protein

Protein	Length	Small ribosomal subunit protein eS31	Small ribosomal subunit protein eS31 eukaryotic-type superfamily	Ubiquitin and ubiquitin-like	Ubiquitin conserved site	Ubiquitin domain	Ubiquitin-like domain	Ubiquitin-like domain superfamily	Zinc-binding ribosomal protein
UniProtKB:Q7SXA3 InterPro	156

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rps27a-201 (1) Ensembl	Ensembl	668 nt	Select Tool ZFIN BLAST
mRNA	rps27a-204 (1) Ensembl	Ensembl	721 nt	Select Tool ZFIN BLAST
ncRNA	rps27a-003 (1) Ensembl	Ensembl	684 nt	Select Tool ZFIN BLAST
ncRNA	rps27a-004 (1) Ensembl	Ensembl	820 nt	Select Tool ZFIN BLAST
ncRNA	rps27a-005 (1) Ensembl	Ensembl	601 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations