Gene

pcdh10a

ID

ZDB-GENE-020731-1

Name

protocadherin 10a

Symbol

pcdh10a Nomenclature History

Previous Names

pcdh10 (1)
ZPCR1 (1)
fc56b06
wu:fc56b06
wu:fq40g12

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to enable calcium ion binding activity. Acts upstream of or within melanocyte migration. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural crest; neural tube; and optic vesicle. Orthologous to human PCDH10 (protocadherin 10).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

18 figures from 5 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu771 (22 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 6 figures from Williams et al., 2018
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pcdh10a Human Ortholog

No data available

Associated With pcdh10a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020894	Cadherin conserved site
Domain	IPR002126	Cadherin-like
Domain	IPR013164	Cadherin, N-terminal
Domain	IPR032455	Cadherin, cytoplasmic C-terminal domain
Family	IPR050174	Protocadherin/Cadherin-related Cell Adhesion
Homologous_superfamily	IPR015919	Cadherin-like superfamily

Domain Details Per Protein

Protein	Length	Cadherin conserved site	Cadherin, cytoplasmic C-terminal domain	Cadherin-like	Cadherin-like superfamily	Cadherin, N-terminal	Protocadherin/Cadherin-related Cell Adhesion
UniProtKB:Q6NYV7 InterPro	1001
UniProtKB:A0A8M3B7B9 InterPro	955
UniProtKB:A0A2R8QI99 InterPro	997

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	pcdh10a-201 (1) Ensembl	Ensembl	510 nt	Select Tool ZFIN BLAST
mRNA	pcdh10a-202 (1) Ensembl	Ensembl	752 nt	Select Tool ZFIN BLAST
mRNA	pcdh10a-203 (1) Ensembl	Ensembl	1,235 nt	Select Tool ZFIN BLAST
mRNA	pcdh10a-204 (1) Ensembl	Ensembl	3,566 nt	Select Tool ZFIN BLAST
mRNA	pcdh10a-205 (1) Ensembl	Ensembl	2,994 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations