Gene

vps52

ID

ZDB-GENE-010430-2

Name

VPS52 subunit of GARP complex

Symbol

vps52 Nomenclature History

Previous Names

fb94c11
sacm2l (1)
wu:fb94c11 (1)

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to enable syntaxin binding activity. Predicted to be involved in endosomal transport and vacuolar transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus. Predicted to be part of GARP complex. Orthologous to human VPS52 (VPS52 subunit of GARP complex).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7148658 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vps52 Human Ortholog

No data available

Associated With vps52 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR048319	Vps52, coiled-coil domain
Domain	IPR048361	Vps52, C-terminal
Family	IPR007258	Vps52

Domain Details Per Protein

Protein	Length	Vps52	Vps52, coiled-coil domain	Vps52, C-terminal
UniProtKB:A0A8M9PSC6 InterPro	615

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	vps52-202 (1) Ensembl	Ensembl		2,450 nt	Select Tool ZFIN BLAST
ncRNA	vps52-003 (1) Ensembl	Ensembl		794 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations