Genomic Feature

zy53

ID
ZDB-ALT-170918-21
Name
zy53
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Yost Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 17
Variants
Variant Type
Small Deletion
Variant Location
Chr 17: 4245239 - 4245244 (GRCz11) (1) Details
Nucleotide change
CAGGAG/-
Variant Notes
6 bp in-frame deletion that removes two amino acids but leaves the predicted  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
6 bp deleted (1)
Transcript Consequence
Inframe Deletion (1)
Protein Consequence
Amino Acid Deletion: 2 AA missing (1)
Sequences
Flanking Sequence
GTGTTGATGGTGAAAAAAGAAATTCTATAAATTGTCCTTTCTTAATACATGGACTTGCTCAACATGTGATGGCTTCATATATATCCCCAATGACTCTTTATAAAAATGCATTTTCCAAATAAAATAAATAAATAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATGTAAACATTTTATTATAAATAAATAAATTATAAATAGTCACTTTTTAAGTGTGGTCCGTAAGATCCTCACCTTGATCCTGCATAAACCTCACGATGTTTCCTCGTACCCCATATTCAGACACCACACATGGGTCATTAACGGTCTGTTTGCTGGCCTGTTTAAAGATTTTCCACATCTGTGATGGCACTGCGGCATGATGCGATGGTTTGGGTCGACTCCAGAGTCCCATAGAGCTCAAAAACAGCTTTTCTTGCACAAGACCATCATCTTCTG
CAGGAG/- AACAGAGACTGAGGGTCAGAAGACAGGCTCTGAGGAGGACCAAGAACATTATTAGATTATAAAAACAGAGCAAAGAACACACACAGGCTTATAAATGCCAGCTGATCAGCTTCACATGGCCAGAAATCCACATCTGCAAGCTGATTGGTGGAGATAAAGGAGTTGATTGATCAGCAGCAGGGGGTGGTGTCATTCACATGCAAATCAGCTCTTTGATGTTTATAGGCATCAGGTTGCCTGGCAGACACAGCTCTGATTTATTGCATGAAGATTTTGGGATCTGCAATGATTTAATAATTAAAATGAGTAGGGGAAAATGCTAAAAATGACTTTTTTATTTGCTTTTTTATTTTATTTTATGAGGGTGATCTGTTTTTTTTTTTTATTTAATTATGACAAAATATTTATATACCGCTACAGACAAAACACTGCAAGTCTCAGTTTTACTGATTTCTGTTTATAAAGGCATCAAATTGACAAGAAAACACACTGATCTGATT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
gdf3zy53/zy53 (AB)Homozygous♀+/- ♂+/-text only from Bisgrove et al., 2017
gdf3zy53/zy53 (AB)Homozygous♀-/-text only from Bisgrove et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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