ZFIN Publication ID PubMed ID Authors Title Journal Year Volume Pages
ZDB-PUB-040217-2 12477932 Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences Proceedings of the National Academy of Sciences of the United States of America 2002 99(26) 16899-903
ZDB-PUB-040624-2 15169890 Correa, R.G., Tergaonkar, V., Ng, J.K., Dubova, I., Izpisúa Belmonte, J.C., and Verma, I.M. Characterization of NF-kappa B/I kappa B proteins in zebra fish and their involvement in notochord development Molecular and cellular biology 2004 24(12) 5257-5268
ZDB-PUB-050803-7 16051172 Correa, R.G., Matsui, T., Tergaonkar, V., Rodriguez-Esteban, C., Izpisúa Belmonte, J.C., and Verma, I.M. Zebrafish IkappaB Kinase 1 Negatively Regulates NF-kappaB Activity Current biology : CB 2005 15(14) 1291-1295
ZDB-PUB-070504-1 17442590 Watzke, J., Schirmer, K., and Scholz, S. Bacterial lipopolysaccharides induce genes involved in the innate immune response in embryos of the zebrafish (Danio rerio) Fish & shellfish immunology 2007 23(4) 901-905
ZDB-PUB-070726-29 17640903 Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions Proceedings of the National Academy of Sciences of the United States of America 2007 104(30) 12428-12433
ZDB-PUB-080527-13 18495251 Chang, M.X., and Nie, P. RNAi suppression of zebrafish peptidoglycan recognition protein 6 (zfPGRP6) mediated differentially expressed genes involved in Toll-like receptor signaling pathway and caused increased susceptibility to Flavobacterium columnare Veterinary Immunology and Immunopathology 2008 124(3-4) 295-301
ZDB-PUB-081218-33 19084604 Chang, M.X., Wang, Y.P., and Nie, P. Zebrafish peptidoglycan recognition protein SC (zfPGRP-SC) mediates multiple intracellular signaling pathways Fish & shellfish immunology 2009 26(2) 264-274
ZDB-PUB-090819-4 19682442 Wang, Y.H., Cheng, C.C., Lee, W.J., Chiou, M.L., Pai, C.W., Wen, C.C., Chen, W.L., and Chen, Y.H. A novel phenotype-based approach for systematically screening antiproliferation metallodrugs Chemico-biological interactions 2009 182(1) 84-91
ZDB-PUB-100811-10 20692251 Fukazawa, C., Santiago, C., Park, K.M., Deery, W.J., Canny, S.G., Holterhoff, C.K., and Wagner, D.S. poky/chuk/ikk1 is required for differentiation of the zebrafish embryonic epidermis Developmental Biology 2010 346(2) 272-283
ZDB-PUB-110131-35 21272652 Wang, W.L., Liu, W., Gong, H.Y., Hong, J.R., Lin, C.C., and Wu, J.L. Activation of cytokine expression occurs through the tnfα/nf-κb-mediated pathway in birnavirus-infected cells Fish & shellfish immunology 2011 31(1) 10-21
ZDB-PUB-110628-35 21676242 Rotman, J., van Gils, W., Butler, D., Spaink, H.P., and Meijer, A.H. Rapid screening of innate immune gene expression in zebrafish using reverse transcription - multiplex ligation-dependent probe amplification BMC research notes 2011 4(1) 196
ZDB-PUB-121220-24 23237906 Lee, S.H., Peng, K.C., Lee, L.H., Pan, C.Y., Hour, A.L., Her, G.M., Hui, C.F., and Chen, J.Y. Characterization of tilapia (Oreochromis niloticus) viperin expression, and inhibition of bacterial growth and modulation of immune-related gene expression by electrotransfer of viperin DNA into zebrafish muscle Veterinary Immunology and Immunopathology 2013 151(3-4) 217-228
ZDB-PUB-130131-13 23335748 Kanwal, Z., Zakrzewska, A., den Hertog, J., Spaink, H.P., Schaaf, M.J., and Meijer, A.H. Deficiency in Hematopoietic Phosphatase Ptpn6/Shp1 Hyperactivates the Innate Immune System and Impairs Control of Bacterial Infections in Zebrafish Embryos Journal of immunology (Baltimore, Md. : 1950) 2013 190(4) 1631-1645
ZDB-PUB-130221-6 23382537 Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function Genome research 2013 23(4) 727-735
ZDB-PUB-130903-18 23936019 Jaafar, L., Podolsky, R.H., and Dynan, W.S. Long-term effects of ionizing radiation on gene expression in a zebrafish model PLoS One 2013 8(7) e69445
ZDB-PUB-131029-1 24069208 Encinas, P., Garcia-Valtanen, P., Chinchilla, B., Gomez-Casado, E., Estepa, A., and Coll, J. Identification of Multipath Genes Differentially Expressed in Pathway-Targeted Microarrays in Zebrafish Infected and Surviving Spring Viremia Carp Virus (SVCV) Suggest Preventive Drug Candidates PLoS One 2013 8(9) e73553
ZDB-PUB-140513-343 24632045 Faikoh, E.N., Hong, Y.H., Hu, S.Y. Liposome-encapsulated cinnamaldehyde enhances zebrafish (Danio rerio) immunity and survival when challenged with Vibrio vulnificus and Streptococcus agalactiae Fish & shellfish immunology 2014 38 15-24
ZDB-PUB-140607-7 24904114 Marín-Juez, R., Jong-Raadsen, S., Yang, S., Spaink, H.P. Hyperinsulinemia induces insulin resistance and immune suppression via Ptpn6/Shp1 in zebrafish The Journal of endocrinology 2014 222(2) 229-41
ZDB-PUB-141230-19 25540193 He, Q., Zhang, C., Wang, L., Zhang, P., Ma, D., Lv, J., Liu, F. Inflammatory signaling regulates hematopoietic stem and progenitor cell emergence in vertebrates Blood 2015 125(7) 1098-106
ZDB-PUB-150312-1 25759395 Dai, Z., Wang, H., Jin, X., Wang, H., He, J., Liu, M., Yin, Z., Sun, Y., Lou, Q. Depletion of suppressor of cytokine signaling-1a causes hepatic steatosis and insulin resistance in zebrafish American journal of physiology. Endocrinology and metabolism 2015 308(10) E849-59
ZDB-PUB-150623-4 26097506 Gui, J., Greene, C.S., Sullivan, C., Taylor, W., Moore, J.H., Kim, C. Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study BioData mining 2015 8 17
ZDB-PUB-151019-15 26472034 Karra, R., Knecht, A.K., Kikuchi, K., Poss, K.D. Myocardial NF-κB activation is essential for zebrafish heart regeneration Proceedings of the National Academy of Sciences of the United States of America 2015 112(43) 13255-60
ZDB-PUB-151223-6 26690195 Cui, Y., Liu, W., Xie, W., Yu, W., Wang, C., Chen, H. Investigation of the Effects of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) on Apoptosis and Cell Cycle in a Zebrafish (Danio rerio) Liver Cell Line International Journal of Environmental Research and Public Health 2015 12 15673-82
ZDB-PUB-160226-16 26908177 Bugel, S.M., Wehmas, L.C., La Du, J.K., Tanguay, R.L. Phenotype anchoring in zebrafish reveals a potential role for matrix metalloproteinases (MMPs) in tamoxifen's effects on skin epithelium Toxicology and applied pharmacology 2016 296 31-41
ZDB-PUB-160828-3 27566230 Crespo, D., Assis, L.H., Furmanek, T., Bogerd, J., Schulz, R.W. Expression profiling identifies Sertoli and Leydig cell genes as Fsh targets in adult zebrafish testis Molecular and Cellular Endocrinology 2016 437 237-251
ZDB-PUB-161225-3 28010888 Mottaz, H., Schönenberger, R., Fischer, S., Eggen, R.I., Schirmer, K., Groh, K.J. Dose-dependent effects of morphine on lipopolysaccharide (LPS)-induced inflammation, and involvement of multixenobiotic resistance (MXR) transporters in LPS efflux in teleost fish Environmental pollution (Barking, Essex : 1987) 2017 221 105-115
ZDB-PUB-170217-7 28202512 Yan, C., Yang, Q., Gong, Z. Tumor-associated neutrophils and macrophages promote gender disparity in hepatocellular carcinoma in zebrafish Cancer research 2017 77(6) 1395-1407
ZDB-PUB-170609-3 28592872 Hu, Y.W., Wu, X.M., Ren, S.S., Cao, L., Nie, P., Chang, M.X. NOD1 deficiency impairs CD44a/Lck as well as PI3K/Akt pathway Scientific Reports 2017 7 2979
ZDB-PUB-170712-7 28695384 Matsumoto, H., Fujiwara, S., Miyagi, H., Nakamura, N., Shiga, Y., Ohta, T., Tsuzuki, M. Carbonic Anhydrase Inhibitors Induce Developmental Toxicity During Zebrafish Embryogenesis, Especially in the Inner Ear Marine biotechnology (New York, N.Y.) 2017 19(5) 430-440
ZDB-PUB-170713-9 28698226 Chernyavskaya, Y., Mudbhary, R., Tokarz, D., Jacob, V., Gopinath, S., Zhang, C., Sun, X., Wang, S., Magnani, E., Madakashira, B.P., Yoder, J.A., Hoshida, Y., Sadler, K.C. Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling Development (Cambridge, England) 2017 144(16) 2925-2939
ZDB-PUB-170726-7 28742146 Mehrdana, F., Kania, P.W., Nazemi, S., Buchmann, K. Immunomodulatory effects of excretory/secretory compounds from Contracaecum osculatum larvae in a zebrafish inflammation model PLoS One 2017 12 e0181277
ZDB-PUB-170806-1 28779539 Haarder, S., Kania, P.W., Holm, T.L., von Gersdorff Jørgensen, L., Buchmann, K. Effect of ES-products from Anisakis (Nematoda: Anisakidae) on experimentally induced colitis in adult zebrafish Parasite immunology 2017 39(10)
ZDB-PUB-170809-8 27913726 Fu, C.Y., Wang, P.C., Tsai, H.J. Competitive binding between Seryl-tRNA synthetase/YY1 complex and NFKB1 at the distal segment results in differential regulation of human vegfa promoter activity during angiogenesis Nucleic acids research 2017 45 2423-2437
ZDB-PUB-171024-1 29059681 Yang, L., Zhou, X., Huang, W., Fang, Q., Hu, J., Yu, L., Ma, N., Zhang, W. Protective Effect of Phillyrin on Lethal LPS-Induced Neutrophil Inflammation in Zebrafish Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017 43 2074-2087
ZDB-PUB-171105-7 29100373 Yan, C., Yang, Q., Shen, H.M., Spitsbergen, J.M., Gong, Z. RETRACTED: Chronically high level of tgfb1a induction causes both hepatocellular carcinoma and cholangiocarcinoma via a dominant Erk pathway in zebrafish. Oncotarget 2017 8 77096-77109
ZDB-PUB-171107-3 29107742 Peng, B., Lin, X.P., Wang, S.N., Yang, M.J., Peng, X.X., Li, H. Polyvalent protective immunogens identified from outer membrane proteins of Vibrio parahaemolyticus and their induced innate immune response Fish & shellfish immunology 2017 72 104-110
ZDB-PUB-171128-12 29175471 Wang, C., Chen, Y.L., Bian, W.P., Xie, S.L., Qi, G.L., Liu, L., Strauss, P.R., Zou, J.X., Pei, D.S. Deletion of mstna and mstnb impairs the immune system and affects growth performance in zebrafish Fish & shellfish immunology 2017 72 572-580
ZDB-PUB-171230-6 29286302 Hsu, C.C., Lai, C.Y., Lin, C.Y., Yeh, K.Y., Her, G.M. MicroRNA-27b Depletion Enhances Endotrophic and Intravascular Lipid Accumulation and Induces Adipocyte Hyperplasia in Zebrafish International Journal of Molecular Sciences 2017 19(1)
ZDB-PUB-180130-3 29375485 Qin, C., Zhang, Z., Wang, Y., Li, S., Ran, C., Hu, J., Xie, Y., Li, W., Zhou, Z. EPSP of L. casei BL23 Protected against the Infection Caused by Aeromonas veronii via Enhancement of Immune Response in Zebrafish. Frontiers in microbiology 2017 8 2406
ZDB-PUB-180223-36 29454830 Cao, L., Wu, X.M., Hu, Y.W., Xue, N.N., Nie, P., Chang, M.X. The discrepancy function of NLRC5 isoforms in antiviral and antibacterial immune responses Developmental and comparative immunology 2018 84 153-163
ZDB-PUB-180418-56 29659823 Jurynec, M.J., Sawitzke, A.D., Beals, T.C., Redd, M.J., Stevens, J., Otterud, B., Leppert, M.H., Grunwald, D.J. A hyperactivating proinflammatory RIPK2 allele associated with early-onset osteoarthritis Human molecular genetics 2018 27(13) 2383-2391
ZDB-PUB-180422-3 29678641 Lai, C.Y., Lin, C.Y., Hsu, C.C., Yeh, K.Y., Her, G.M. Liver-directed microRNA-7a depletion induces nonalcoholic fatty liver disease by stabilizing YY1-mediated lipogenic pathways in zebrafish Biochimica et biophysica acta 2018 1863(8) 844-856
ZDB-PUB-180615-18 29902668 Xu, H., Zhang, X., Li, H., Li, C., Huo, X.J., Hou, L.P., Gong, Z. Immune response induced by major environmental pollutants through altering neutrophils in zebrafish larvae Aquatic toxicology (Amsterdam, Netherlands) 2018 201 99-108
ZDB-PUB-180810-8 30091016 Liao, Y., Wei, J., Wang, J., Shi, X., Luo, J., Song, B.L. The non-canonical NF-κB pathway promotes NPC2 expression and regulates intracellular cholesterol trafficking Science China. Life sciences 2018 61(10) 1222-1232
ZDB-PUB-180811-12 29289655 Wang, S.N., Cheng, Z.X., Ling, X.P., Chu, X., Peng, X.X., Li, H. Construction, immune protection and innate immune response of shuffled polyvalent ompAs vaccines Fish & shellfish immunology 2018 74 325-331
ZDB-PUB-180828-10 29438846 Cheng, Z.X., Chu, X., Wang, S.N., Peng, X.X., Li, H. Six genes of ompA family shuffling for development of polyvalent vaccines against Vibrio alginolyticus and Edwardsiella tarda Fish & shellfish immunology 2018 75 308-315
ZDB-PUB-180915-1 30213642 Li, J.J., Zhang, Y., Han, L.W., Tian, Q.P., He, Q.X., Wang, X.M., Sun, C., Han, J., Liu, K.C. Tenacissoside H exerts an anti-inflammatory effect by regulating the nf-κb and p38 pathways in zebrafish Fish & shellfish immunology 2018 83 205-212
ZDB-PUB-181106-11 30390549 Sun, L., Gu, L., Tan, H., Liu, P., Gao, G., Tian, L., Chen, H., Lu, T., Qian, H., Fu, Z., Pan, X. Effects of 17α‑ethinylestradiol on caudal fin regeneration in zebrafish larvae The Science of the total environment 2018 653 10-22
ZDB-PUB-181106-5 30389644 Jiang, M., Gong, Q.Y., Lai, S.S., Cheng, Z.X., Chen, Z.G., Zheng, J., Peng, B. Phenylalanine enhances innate immune response to clear ceftazidime-resistant Vibrio alginolyticus in Danio rerio Fish & shellfish immunology 2018 84 912-919
ZDB-PUB-190717-2 31307377 Cheung, C.T., Nguyen, T.V., Le Cam, A., Patinote, A., Journot, L., Reynes, C., Bobe, J. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization BMC Genomics 2019 20 584
ZDB-PUB-190724-10 31323329 Yi, C.C., Liu, C.H., Chuang, K.P., Chang, Y.T., Hu, S.Y. A potential probiotic Chromobacterium aquaticum with bacteriocin-like activity enhances the expression of indicator genes associated with nutrient metabolism, growth performance and innate immunity against pathogen infections in zebrafish (Danio rerio) Fish & shellfish immunology 2019 93 124-134
ZDB-PUB-190803-10 31372513 Zhang, Z., Ran, C., Ding, Q.W., Liu, H.L., Xie, M.X., Yang, Y.L., Xie, Y.D., Gao, C.C., Zhang, H.L., Zhou, Z.G. Ability of prebiotic polysaccharides to activate a HIF1α-antimicrobial peptide axis determines liver injury risk in zebrafish Communications biology 2019 2 274
ZDB-PUB-190920-9 31536771 Bousquet, M.S., Ratnayake, R., Pope, J.L., Chen, Q.Y., Zhu, F., Chen, S., Carney, T.J., Gharaibeh, R.Z., Jobin, C., Paul, V.J., Luesch, H. Seaweed natural products modify the host inflammatory response via Nrf2 signaling and alter colon microbiota composition and gene expression Free radical biology & medicine 2019 146 306-323
ZDB-PUB-191112-10 31710851 Lin, W., Guo, H., Wang, L., Zhang, D., Wu, X., Li, L., Qiu, Y., Yang, L., Li, D., Tang, R. Waterborne microcystin-LR exposure induced chronic inflammatory response via MyD88-dependent toll-like receptor signaling pathway in male zebrafish The Science of the total environment 2019 702 134969
ZDB-PUB-191213-13 31830569 Li, L., Song, M., Peng, B., Peng, X.X., Li, H. Identification and innate immunity mechanism of protective immunogens from extracellular proteins of Edwardsiella tarda Fish & shellfish immunology 2019 97 41-45
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ZDB-PUB-200207-19 32021104 Zhao, Y., Wang, H.L., Li, T.T., Yang, F., Tzeng, C.M. Baicalin Ameliorates Dexamethasone-Induced Osteoporosis by Regulation of the RANK/RANKL/OPG Signaling Pathway Drug design, development and therapy 2020 14 195-206
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ZDB-PUB-200822-12 32818664 Bennoit, N.R., Craig, P.M. Increased metabolic rate associated with immune stimulation of heat-killed Vibrio anguillarum at different temperatures in zebrafish (Danio rerio) Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology 2020 250 110489
ZDB-PUB-201002-101 32949975 Pípal, M., Legradi, J., Smutná, M., Kočí, T., Priebojová, J., Bláhová, L., Krauss, M., Hilscherová, K. Neurobehavioral effects of cyanobacterial biomass field extracts on zebrafish embryos and potential role of retinoids Aquatic toxicology (Amsterdam, Netherlands) 2020 228 105613
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ZDB-PUB-210430-11 33914736 Keatinge, M., Tsarouchas, T.M., Munir, T., Porter, N.J., Larraz, J., Gianni, D., Tsai, H.H., Becker, C.G., Lyons, D.A., Becker, T. CRISPR gRNA phenotypic screening in zebrafish reveals pro-regenerative genes in spinal cord injury PLoS Genetics 2021 17 e1009515
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