ZFIN Publication ID	PubMed ID	Authors	Title	Journal	Year	Volume	Pages
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proceedings of the National Academy of Sciences of the United States of America	2002	99(26)	16899-903
ZDB-PUB-040914-6	15358764	Nadauld, L.D., Sandoval, I.T., Chidester, S., Yost, H.J., and Jones, D.A.	Adenomatous polyposis coli control of retinoic acid biosynthesis is critical for zebrafish intestinal development and differentiation	The Journal of biological chemistry	2004	279(49)	51581-51589
ZDB-PUB-050623-9	15967793	Nadauld, L.D., Shelton, D.N., Chidester, S., Yost, H.J., and Jones, D.A.	The zebrafish retinol dehydrogenase, rdh1l, is essential for intestinal development and is regulated by the tumor suppressor adenomatous polyposis coli	The Journal of biological chemistry	2005	280(34)	30490-30495
ZDB-PUB-060501-4	16631158	Cheng, W., Guo, L., Zhang, Z., Soo, H.M., Wen, C., Wu, W., and Peng, J.	HNF factors form a network to regulate liver-enriched genes in zebrafish	Developmental Biology	2006	294(2)	482-496
ZDB-PUB-060526-2	16699180	Eisinger, A.L., Nadauld, L.D., Shelton, D.N., Peterson, P.W., Phelps, R.A., Chidester, S., Stafforini, D.M., Prescott, S.M., and Jones, D.A.	The adenomatous polyposis coli tumor suppressor gene regulates expression of cyclooxygenase-2 by a mechanism that involves retinoic Acid	The Journal of biological chemistry	2006	281(29)	20474-20482
ZDB-PUB-060731-18	16872691	Hoffmann, J.L., Torontali, S.P., Thomason, R.G., Lee, D.M., Brill, J.L., Price, B.B., Carr, G.J., Versteeg, D.J.	Hepatic gene expression profiling using Genechips in zebrafish exposed to 17alpha-ethynylestradiol	Aquatic toxicology (Amsterdam, Netherlands)	2006	79(3)	233-246
ZDB-PUB-061020-30	17028196	Nadauld, L.D., Phelps, R., Moore, B.C., Eisinger, A., Sandoval, I.T., Chidester, S., Peterson, P.W., Manos, E.J., Sklow, B., Burt, R.W., and Jones, D.A.	Adenomatous polyposis coli control of C-terminal binding protein-1 stability regulates expression of intestinal retinol dehydrogenases	The Journal of biological chemistry	2006	281(49)	37828-37835
ZDB-PUB-080501-2	18442396	Krens, S.F., Corredor-Adamez, M., He, S., Snaar-Jagalska, B.E., and Spaink, H.P.	ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis	BMC Genomics	2008	9	196
ZDB-PUB-080613-2	16860536	Belyaeva, O.V., and Kedishvili, N.Y.	Comparative genomic and phylogenetic analysis of short-chain dehydrogenases/reductases with dual retinol/sterol substrate specificity	Genomics	2006	88(6)	820-830
ZDB-PUB-101004-15	20850014	Rai, K., Sarkar, S., Broadbent, T.J., Voas, M., Grossmann, K.F., Nadauld, L.D., Dehghanizadeh, S., Hagos, F.T., Li, Y., Toth, R.K., Chidester, S., Bahr, T.M., Johnson, W.E., Sklow, B., Burt, R., Cairns, B.R., and Jones, D.A.	DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC	Cell	2010	142(6)	930-942
ZDB-PUB-120110-5	22205629	Levi, L., Ziv, T., Admon, A., Levavi-Sivan, B., and Lubzens, E.	Insight into molecular pathways of retinal metabolism, associated with vitellogenesis in zebrafish	American journal of physiology. Endocrinology and metabolism	2012	302(6)	E626-644
ZDB-PUB-120327-7	22442707	Hozumi, S., Hirabayashi, R., Yoshizawa, A., Ogata, M., Ishitani, T., Tsutsumi, M., Kuroiwa, A., Itoh, M., and Kikuchi, Y.	DEAD-Box Protein Ddx46 Is Required for the Development of the Digestive Organs and Brain in Zebrafish	PLoS One	2012	7(3)	e33675
ZDB-PUB-130110-10	23284293	Tovin, A., Alon, S., Ben-Moshe, Z., Mracek, P., Vatine, G., Foulkes, N.S., Jacob-Hirsch, J., Rechavi, G., Toyama, R., Coon, S.L., Klein, D.C., Eisenberg, E., and Gothilf, Y.	Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork	PLoS Genetics	2012	8(12)	e1003116
ZDB-PUB-130309-4	23422196	Wang, W., Zhang, L.F., Gui, Y.H., and Song, H.Y.	Retinol dehydrogenase, RDH1l, is essential for the heart development and cardiac performance in zebrafish	Chinese Medical Journal	2013	126(4)	722-728
ZDB-PUB-150804-5	26235539	Gebauer, J.M., Kobbe, B., Paulsson, M., Wagener, R.	Structure, evolution and expression of collagen XXVIII: Lessons from the zebrafish	Matrix biology : journal of the International Society for Matrix Biology	2016	49	106-19
ZDB-PUB-170214-96	26469318	Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R.	RFX transcription factors are essential for hearing in mice	Nature communications	2015	6	8549
ZDB-PUB-170303-4	28252024	Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G.	Evolution of complexity in the zebrafish synapse proteome	Nature communications	2017	8	14613
ZDB-PUB-210411-12	33838512	Ivanovics, B., Gazsi, G., Reining, M., Berta, I., Poliska, S., Toth, M., Domokos, A., Nagy, B., Staszny, A., Cserhati, M., Csosz, E., Bacsi, A., Csenki-Bakos, Z., Acs, A., Urbanyi, B., Czimmerer, Z.	Embryonic exposure to low concentrations of aflatoxin B1 triggers global transcriptomic changes, defective yolk lipid mobilization, abnormal gastrointestinal tract development and inflammation in zebrafish	Journal of hazardous materials	2021	416	125788